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start [2017/09/13 08:46]
gaignard
start [2017/10/09 11:16] (current)
gaignard [Publications]
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 +====== Objectives ======  ​
 +
 SyMeTRIC is a regional federated project in **Systems Medicine** funded by the Pays de la Loire french region. Similarly to Systems Biology, Systems Medicine approaches aim at integrating several information sources to design and validate bio-models and biomarkers to anticipate and enhance patients following (diagnosis, treatment response prediction, prognosis). SyMeTRIC is a regional federated project in **Systems Medicine** funded by the Pays de la Loire french region. Similarly to Systems Biology, Systems Medicine approaches aim at integrating several information sources to design and validate bio-models and biomarkers to anticipate and enhance patients following (diagnosis, treatment response prediction, prognosis).
  
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   * [2017] M. Lefebvre, J. Bourdon, C. Guziolowski,​ A. Gaignard. **Regulatory and signaling network assembly through linked open data**, demo paper, Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM2017). [[https://​fr.slideshare.net/​MarieLefebvre11/​regulatory-and-signaling-network-assembly-through-linked-open-data-77947458|(Slides)]]   * [2017] M. Lefebvre, J. Bourdon, C. Guziolowski,​ A. Gaignard. **Regulatory and signaling network assembly through linked open data**, demo paper, Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM2017). [[https://​fr.slideshare.net/​MarieLefebvre11/​regulatory-and-signaling-network-assembly-through-linked-open-data-77947458|(Slides)]]
   * [2017] Y. Lelievre, A. Bihouée, E. Charpentier,​ A. Gaignard, S. Souchet and D. Vintache, **Developing and sharing reproducible bioinformatics pipelines: best practices**,​ poster, Journées Ouvertes en BioInformatique et Mathématiques (JOBIM2017). {{:​poster_jobim_2017.pdf|(Poster)}}   * [2017] Y. Lelievre, A. Bihouée, E. Charpentier,​ A. Gaignard, S. Souchet and D. Vintache, **Developing and sharing reproducible bioinformatics pipelines: best practices**,​ poster, Journées Ouvertes en BioInformatique et Mathématiques (JOBIM2017). {{:​poster_jobim_2017.pdf|(Poster)}}
-  * [2017] A. Gaignard, K. Belhajjame, H. Skaf-Molli. **SHARP: Harmonizing cross-workflow provenance**,​ research paper, Semantic Web solutions for large-scale biomedical data analytics (SeWebMeDA ‘17), full day workshop at ESWC2017, Portoroz, Slovenia. [[https://​fr.slideshare.net/​alban_gaignard/​sharp-harmonizing-crossworkflow-provenance|(Slides)]] +  * [2017] A. Gaignard, K. Belhajjame, H. Skaf-Molli. **SHARP: Harmonizing cross-workflow provenance**,​ research paper, Semantic Web solutions for large-scale biomedical data analytics (SeWebMeDA ‘17), full day workshop at ESWC2017, Portoroz, Slovenia. ​[[http://​ceur-ws.org/​Vol-1948/​paper5.pdf|(Paper)]][[https://​fr.slideshare.net/​alban_gaignard/​sharp-harmonizing-crossworkflow-provenance|(Slides)]] 
-  * [2017] A. Gaignard, K. Belhajjame, H. Skaf-Molli. **SHARP: Harmonizing Galaxy and Taverna workflow provenance**,​ demo paper, Sematic Web solutions for large-scale biomedical data analytics (SeWebMeDA ‘17), full day workshop at ESWC2017, Portoroz, Slovenia. [[https://​fr.slideshare.net/​alban_gaignard/​sharp-harmonizing-galaxy-and-taverna-worflow-provenance|(Slides)]]+  * [2017] A. Gaignard, K. Belhajjame, H. Skaf-Molli. **SHARP: Harmonizing Galaxy and Taverna workflow provenance**,​ demo paper, Sematic Web solutions for large-scale biomedical data analytics (SeWebMeDA ‘17), full day workshop at ESWC2017, Portoroz, Slovenia. ​[[http://​ceur-ws.org/​Vol-1948/​paper7.pdf|(Paper)]][[https://​fr.slideshare.net/​alban_gaignard/​sharp-harmonizing-galaxy-and-taverna-worflow-provenance|(Slides)]]
   * [2017] Sarah Cohen-Boulakia,​ Khalid Belhajjame, Olivier Collin, Jérôme Chopard, Christine Froidevaux, Alban Gaignard, Konrad Hinsen, Pierre Larmande, Yvan Le Bras, Frédéric Lemoine, Fabien Mareuil, Hervé Ménager, Christophe Pradal, Christophe Blanchet. **Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities**,​ Future Generation Computing Systems journal.[[http://​www.sciencedirect.com/​science/​article/​pii/​S0167739X17300316|(Paper)]]   * [2017] Sarah Cohen-Boulakia,​ Khalid Belhajjame, Olivier Collin, Jérôme Chopard, Christine Froidevaux, Alban Gaignard, Konrad Hinsen, Pierre Larmande, Yvan Le Bras, Frédéric Lemoine, Fabien Mareuil, Hervé Ménager, Christophe Pradal, Christophe Blanchet. **Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities**,​ Future Generation Computing Systems journal.[[http://​www.sciencedirect.com/​science/​article/​pii/​S0167739X17300316|(Paper)]]
   * [2016] Alban Gaignard, Hala Skaf-Molli, Audrey Bihouée. **From scientific workflow patterns to 5-star linked open data**, 8th USENIX Workshop on the Theory and Practice of Provenance (TaPP '16). [[https://​www.usenix.org/​system/​files/​conference/​tapp16/​tapp16-paper-gaignard.pdf|(Paper)]][[http://​fr.slideshare.net/​hala44/​poemtapp16|(Slides)]]   * [2016] Alban Gaignard, Hala Skaf-Molli, Audrey Bihouée. **From scientific workflow patterns to 5-star linked open data**, 8th USENIX Workshop on the Theory and Practice of Provenance (TaPP '16). [[https://​www.usenix.org/​system/​files/​conference/​tapp16/​tapp16-paper-gaignard.pdf|(Paper)]][[http://​fr.slideshare.net/​hala44/​poemtapp16|(Slides)]]
start.1505285175.txt.gz · Last modified: 2017/09/13 08:46 by gaignard